<?xml version="1.0"?>
<tool name="Colocalization" id="ip_colocalization" version="0.0.6">
   <description>Colocalization of two segmentation maps</description>
  <requirements>
    <requirement type="package" version="0.14.0">scikit-image</requirement>
    <requirement type="package" version="1.15.4">numpy</requirement>
  </requirements>
   <command>
   <![CDATA[
    python '$__tool_directory__/colocalization_viz.py' '$input_mask1' '$input_mask2' ./tmp.png
    && mv ./tmp.png '$output'
   ]]>
   </command>
   <inputs>
      <param name="input_mask1" type="data" format="tiff" label="Mask1 Source File" />
	    <param name="input_mask2" type="data" format="tiff" label="Mask2 Source File" />
   </inputs>
   <outputs>
        <data format="png" name="output" />
   </outputs>
   <tests>
    <test>
      <param name="input_mask1" value="sample1.tiff"/>
      <param name="input_mask2" value="sample2.tiff"/>
      <output name="output" value="out.png" ftype="png" compare="sim_size"/>
    </test>
   </tests>
   <help>
      This tool overlays two segmentation maps and displays the colocalization results.
   </help>
   <citations>
     <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
 </citations>
</tool>