Mercurial > repos > thomaswollmann > color_deconvolution
comparison color-deconvolution.xml @ 0:d7bd56ed3d85 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit b405a7bf071e77b80e314e4a5c340af71fd63adf
author | thomaswollmann |
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date | Tue, 07 Feb 2017 09:56:10 -0500 |
parents | |
children | e5d95eb1daad |
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1 <tool id="color_deconvolution" name="color-deconvolution" version="0.2"> | |
2 <requirements> | |
3 <requirement type="package" version="0.12.3" >scikit-image</requirement> | |
4 <requirement type="package" version="4.0.0">pillow</requirement> | |
5 <requirement type="package" version="0.18.1">scikit-learn</requirement> | |
6 <requirement type="package" version="1.11">numpy</requirement> | |
7 </requirements> | |
8 <description>Color deconvolution</description> | |
9 <command> | |
10 <![CDATA[ | |
11 python "$__tool_directory__/color_deconvolution.py" '$input' '$output' '$convtype' | |
12 ]]> | |
13 </command> | |
14 <inputs> | |
15 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image file with 3 channels"/> | |
16 <param name="convtype" type="select" label="Transformation type"> | |
17 <option value="pca" selected="True">pca</option> | |
18 <option value="xyz2rgb">xyz2rgb</option> | |
19 <option value="rgb_from_rbd">rgb_from_rbd</option> | |
20 <option value="rgb_from_hdx">rgb_from_hdx</option> | |
21 <option value="rgb2hsv">rgb2hsv</option> | |
22 <option value="rgb_from_bro">rgb_from_bro</option> | |
23 <option value="bpx_from_rgb">bpx_from_rgb</option> | |
24 <option value="hed_from_rgb">hed_from_rgb</option> | |
25 <option value="rgbcie2rgb">rgbcie2rgb</option> | |
26 <option value="hdx_from_rgb">hdx_from_rgb</option> | |
27 <option value="xyz2luv">xyz2luv</option> | |
28 <option value="rgb2lab">rgb2lab</option> | |
29 <option value="hpx_from_rgb">hpx_from_rgb</option> | |
30 <option value="rgb_from_fgx">rgb_from_fgx</option> | |
31 <option value="rgb_from_gdx">rgb_from_gdx</option> | |
32 <option value="lab2xyz">lab2xyz</option> | |
33 <option value="rgb_from_hpx">rgb_from_hpx</option> | |
34 <option value="lab2rgb">lab2rgb</option> | |
35 <option value="rgb2rgbcie">rgb2rgbcie</option> | |
36 <option value="bex_from_rgb">bex_from_rgb</option> | |
37 <option value="xyz2lab">xyz2lab</option> | |
38 <option value="rgb_from_bex">rgb_from_bex</option> | |
39 <option value="fgx_from_rgb">fgx_from_rgb</option> | |
40 <option value="rbd_from_rgb">rbd_from_rgb</option> | |
41 <option value="rgb2hed">rgb2hed</option> | |
42 <option value="hed2rgb">hed2rgb</option> | |
43 <option value="luv2rgb">luv2rgb</option> | |
44 <option value="luv2xyz">luv2xyz</option> | |
45 <option value="lch2lab">lch2lab</option> | |
46 <option value="rgb2luv">rgb2luv</option> | |
47 <option value="ahx_from_rgb">ahx_from_rgb</option> | |
48 <option value="rgb_from_hax">rgb_from_hax</option> | |
49 <option value="hax_from_rgb">hax_from_rgb</option> | |
50 <option value="rgb_from_bpx">rgb_from_bpx</option> | |
51 <option value="rgb2xyz">rgb2xyz</option> | |
52 <option value="gdx_from_rgb">gdx_from_rgb</option> | |
53 <option value="rgb_from_ahx">rgb_from_ahx</option> | |
54 <option value="lab2lch">lab2lch</option> | |
55 <option value="rgb_from_hed">rgb_from_hed</option> | |
56 <option value="bro_from_rgb">bro_from_rgb</option> | |
57 <option value="hsv2rgb">hsv2rgb</option> | |
58 </param> | |
59 </inputs> | |
60 <outputs> | |
61 <data format="tiff" name="output"/> | |
62 </outputs> | |
63 <tests> | |
64 <test> | |
65 <param name="input" value="galaxyIcon_noText.png" /> | |
66 <param name="convtype" value="rgb2hsv" /> | |
67 <output name="output" ftype="tiff" /> | |
68 </test> | |
69 </tests> | |
70 <help>This tools performs several color deconvolution techniques.</help> | |
71 <citations> | |
72 <citation type="doi">10.7717/peerj.453</citation> | |
73 <citation type="bibtex">@inproceedings{sklearn_api, | |
74 author = {Lars Buitinck and Gilles Louppe and Mathieu Blondel and | |
75 Fabian Pedregosa and Andreas Mueller and Olivier Grisel and | |
76 Vlad Niculae and Peter Prettenhofer and Alexandre Gramfort | |
77 and Jaques Grobler and Robert Layton and Jake VanderPlas and | |
78 Arnaud Joly and Brian Holt and Ga{\"{e}}l Varoquaux}, | |
79 title = {{API} design for machine learning software: experiences from the scikit-learn | |
80 project}, | |
81 booktitle = {ECML PKDD Workshop: Languages for Data Mining and Machine Learning}, | |
82 year = {2013}, | |
83 pages = {108--122}, | |
84 }</citation> | |
85 </citations> | |
86 </tool> |