Mercurial > repos > thomaswollmann > color_deconvolution
view color-deconvolution.xml @ 3:3006ce5f7a7d draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution commit 98a304667a4ebb40e0e3daf35b9b1da3de5169cc
author | thomaswollmann |
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date | Sat, 11 Feb 2017 17:00:20 -0500 |
parents | 8fcbcf6509d8 |
children | 9bc46ae5729e |
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<tool id="color_deconvolution" name="Color Deconvolution" version="0.5"> <description>Color deconvolution</description> <requirements> <requirement type="package" version="0.12.3" >scikit-image</requirement> <requirement type="package" version="4.0.0">pillow</requirement> <requirement type="package" version="0.18.1">scikit-learn</requirement> <requirement type="package" version="1.12">numpy</requirement> </requirements> <command> <![CDATA[ python "$__tool_directory__/color_deconvolution.py" '$input' '$output' '$convtype' ]]> </command> <inputs> <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image file with 3 channels"/> <param name="convtype" type="select" label="Transformation type"> <option value="ica" selected="True">ica</option> <option value="pca">pca</option> <option value="nmf">nmf</option> <option value="fa">fa</option> <option value="xyz2rgb">xyz2rgb</option> <option value="rgb_from_rbd">rgb_from_rbd</option> <option value="rgb_from_hdx">rgb_from_hdx</option> <option value="rgb2hsv">rgb2hsv</option> <option value="rgb_from_bro">rgb_from_bro</option> <option value="bpx_from_rgb">bpx_from_rgb</option> <option value="hed_from_rgb">hed_from_rgb</option> <option value="rgbcie2rgb">rgbcie2rgb</option> <option value="hdx_from_rgb">hdx_from_rgb</option> <option value="xyz2luv">xyz2luv</option> <option value="rgb2lab">rgb2lab</option> <option value="hpx_from_rgb">hpx_from_rgb</option> <option value="rgb_from_fgx">rgb_from_fgx</option> <option value="rgb_from_gdx">rgb_from_gdx</option> <option value="lab2xyz">lab2xyz</option> <option value="rgb_from_hpx">rgb_from_hpx</option> <option value="lab2rgb">lab2rgb</option> <option value="rgb2rgbcie">rgb2rgbcie</option> <option value="bex_from_rgb">bex_from_rgb</option> <option value="xyz2lab">xyz2lab</option> <option value="rgb_from_bex">rgb_from_bex</option> <option value="fgx_from_rgb">fgx_from_rgb</option> <option value="rbd_from_rgb">rbd_from_rgb</option> <option value="rgb2hed">rgb2hed</option> <option value="hed2rgb">hed2rgb</option> <option value="luv2rgb">luv2rgb</option> <option value="luv2xyz">luv2xyz</option> <option value="lch2lab">lch2lab</option> <option value="rgb2luv">rgb2luv</option> <option value="ahx_from_rgb">ahx_from_rgb</option> <option value="rgb_from_hax">rgb_from_hax</option> <option value="hax_from_rgb">hax_from_rgb</option> <option value="rgb_from_bpx">rgb_from_bpx</option> <option value="rgb2xyz">rgb2xyz</option> <option value="gdx_from_rgb">gdx_from_rgb</option> <option value="rgb_from_ahx">rgb_from_ahx</option> <option value="lab2lch">lab2lch</option> <option value="rgb_from_hed">rgb_from_hed</option> <option value="bro_from_rgb">bro_from_rgb</option> <option value="hsv2rgb">hsv2rgb</option> </param> </inputs> <outputs> <data format="tiff" name="output"/> </outputs> <tests> <test> <param name="input" value="galaxyIcon_noText.png" /> <param name="convtype" value="rgb2hsv" /> <output name="output" ftype="tiff" /> </test> </tests> <help>This tools performs several color deconvolution techniques.</help> <citations> <citation type="doi">10.7717/peerj.453</citation> <citation type="bibtex">@inproceedings{sklearn_api, author = {Lars Buitinck and Gilles Louppe and Mathieu Blondel and Fabian Pedregosa and Andreas Mueller and Olivier Grisel and Vlad Niculae and Peter Prettenhofer and Alexandre Gramfort and Jaques Grobler and Robert Layton and Jake VanderPlas and Arnaud Joly and Brian Holt and Ga{\"{e}}l Varoquaux}, title = {{API} design for machine learning software: experiences from the scikit-learn project}, booktitle = {ECML PKDD Workshop: Languages for Data Mining and Machine Learning}, year = {2013}, pages = {108--122}, }</citation> </citations> </tool>