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comparison count_objects.xml @ 0:f02a2d0f407c draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit d93e1dd276027cfc3fb518236110395a23d96f66
author thomaswollmann
date Wed, 16 Jan 2019 15:34:44 -0500
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1 <?xml version="1.0"?>
2 <tool name="Count Objects" id="ip_count_objects" version="0.0.4">
3 <description>Count Objects</description>
4 <requirements>
5 <requirement type="package" version="0.14.0">scikit-image</requirement>
6 <requirement type="package" version="1.15.4">numpy</requirement>
7 </requirements>
8 <command>
9 <![CDATA[
10 python '$__tool_directory__/count_objects.py' '$input' '$output'
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="tiff" label="Source file" />
15 </inputs>
16 <outputs>
17 <data format="tabular" name="output" />
18 </outputs>
19 <tests>
20 <test>
21 <param name="input" value="input.tiff"/>
22 <output name="output" value="table.csv" ftype="tabular"/>
23 </test>
24 </tests>
25 <help>
26 This tool counts objects in a labeled image.
27 </help>
28 <citations>
29 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
30 </citations>
31 </tool>