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comparison detection_viz.xml @ 0:629d9e8ca64c draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
author thomaswollmann
date Wed, 12 Dec 2018 04:37:59 -0500
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1 <tool id="detection_viz" name="Detection Visualization" version="0.1">
2 <description>Detection Visualization</description>
3 <requirements>
4 <requirement type="package" version="0.14.1" >scikit-image</requirement>
5 <requirement type="package" version="3.0.2" >matplotlib</requirement>
6 </requirements>
7 <command>
8 <![CDATA[
9 python '$__tool_directory__/detection_viz.py' '$input' '$output' --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp
10 ]]>
11 </command>
12 <inputs>
13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>
14 <param name="tp" type="boolean" checked="false" falsevalue="" truevalue="--tp"/>
15 <param name="fn" type="boolean" checked="false" falsevalue="" truevalue="--fn"/>
16 <param name="fp" type="boolean" checked="false" falsevalue="" truevalue="--fp"/>
17 <param name="thickness" type="float" value="3.0" label="Stroke thickness"/>
18 <param name="circle_radius" type="float" value="50.0" label="Circle radius"/>
19 </inputs>
20 <outputs>
21 <data format="png" name="output"/>
22 </outputs>
23 <tests>
24 <test>
25 <param name="input" value="sample.png"/>
26 <output name="output" value="out.png" ftype="png"/>
27 </test>
28 </tests>
29 <help>Draws circles of different colors around detected true positives, false negatives and false positives.</help>
30 <citations>
31 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
32 </citations>
33 </tool>