Mercurial > repos > thomaswollmann > detection_viz
comparison detection_viz.xml @ 0:629d9e8ca64c draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
author | thomaswollmann |
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date | Wed, 12 Dec 2018 04:37:59 -0500 |
parents | |
children | ff66bae1f7f8 |
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-1:000000000000 | 0:629d9e8ca64c |
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1 <tool id="detection_viz" name="Detection Visualization" version="0.1"> | |
2 <description>Detection Visualization</description> | |
3 <requirements> | |
4 <requirement type="package" version="0.14.1" >scikit-image</requirement> | |
5 <requirement type="package" version="3.0.2" >matplotlib</requirement> | |
6 </requirements> | |
7 <command> | |
8 <![CDATA[ | |
9 python '$__tool_directory__/detection_viz.py' '$input' '$output' --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp | |
10 ]]> | |
11 </command> | |
12 <inputs> | |
13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/> | |
14 <param name="tp" type="boolean" checked="false" falsevalue="" truevalue="--tp"/> | |
15 <param name="fn" type="boolean" checked="false" falsevalue="" truevalue="--fn"/> | |
16 <param name="fp" type="boolean" checked="false" falsevalue="" truevalue="--fp"/> | |
17 <param name="thickness" type="float" value="3.0" label="Stroke thickness"/> | |
18 <param name="circle_radius" type="float" value="50.0" label="Circle radius"/> | |
19 </inputs> | |
20 <outputs> | |
21 <data format="png" name="output"/> | |
22 </outputs> | |
23 <tests> | |
24 <test> | |
25 <param name="input" value="sample.png"/> | |
26 <output name="output" value="out.png" ftype="png"/> | |
27 </test> | |
28 </tests> | |
29 <help>Draws circles of different colors around detected true positives, false negatives and false positives.</help> | |
30 <citations> | |
31 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
32 </citations> | |
33 </tool> |