Mercurial > repos > thomaswollmann > points2labelimage

comparison points2label.xml @ 0:14525b8c8d67 draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2labelimage/ commit 356f2556bd629e5473d6711ec71372ea17d3e28f
author thomaswollmann
date Wed, 12 Dec 2018 05:12:06 -0500
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1 <tool id="points2labelimage" name="Points 2 Label" version="0.2">
2 <description>Points to Label Image</description>
3 <requirements>
4 <requirement type="package" version="1.15.4">numpy</requirement>
5 <requirement type="package" version="0.14.0">scikit-image</requirement>
6 <requirement type="package" version="0.23.4">pandas</requirement>
7 </requirements>
8 <command>
9 <![CDATA[
10 python '$__tool_directory__/points2label.py' '$input' '$output' '$org_file' $has_header $is_tsv
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="csv" label="Point CSV file"/>
15 <param name="org_file" type="data" format="tiff" label="Original label image file"/>
16 <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" />
17 <param name="is_tsv" optional="true" type="boolean" checked="false" truevalue="--is_tsv True" falsevalue="" help="tab separated input file"/>
18 </inputs>
19 <outputs>
20 <data name="output" format="tiff"/>
21 </outputs>
22 <tests>
23 <test>
24 <param name="input" value="points.csv"/>
25 <param name="org_file" value="galaxyIcon_noText.tif"/>
26 <output name="output" file="out.tif" ftype="tiff" compare="sim_size"/><!--to allow a change in e.g. date-->
27 </test>
28 </tests>
29 <help> This tool converts points to a label image. </help>
30 <citations>
31 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
32 </citations>
33 </tool>