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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/scale_image/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
author thomaswollmann
date Mon, 07 Jan 2019 05:39:54 -0500
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2d69cbf0f2d2 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/scale_image/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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1 <tool id="scale_image" name="Scale Image" version="0.2">
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2 <description>Scales image</description>
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3 <requirements>
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4 <requirement type="package" version="0.14.0">scikit-image</requirement>
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5 <requirement type="package" version="1.1.0">scipy</requirement>
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6 </requirements>
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7 <command>
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8 <![CDATA[
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9 python '$__tool_directory__/scale_image.py' '$input' ./out.png
2d69cbf0f2d2 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/scale_image/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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10 #if $use_scale_option.use_scale == 'true'
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11 $use_scale_option.scale
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12 #else if $use_scale_option.use_scale == 'false'
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13 '[$use_scale_option.scale_x, $use_scale_option.scale_y]'
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14 #end if
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15 $order
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16
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17 &&
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18 mv ./out.png '$output'
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19 ]]>
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20 </command>
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21 <inputs>
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22 <param name="input" type="data" format="png" label="Image file"/>
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23 <conditional name="use_scale_option"><!--a third option (using one integer as percentage scaling) could still be implemented-->
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24 <param label="Lock scaling between image dimensions" name="use_scale" type="select">
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25 <option selected="true" value="true">Lock</option>
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26 <option value="false">Individual scales</option>
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27 </param>
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28 <when value="true">
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29 <param name="scale" size="4" type="float" value="1.0" label="Scaling factor" />
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30 </when>
2d69cbf0f2d2 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/scale_image/ commit 787ebcc8daa1834214bc92c201c921c704ef2d1f
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31 <when value="false">
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32 <param name="scale_x" size="4" type="integer" value="100" label="New height of the image in pixels" />
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33 <param name="scale_y" size="4" type="integer" value="100" label="New width of the image in pixels" />
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34 </when>
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35 </conditional>
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36 <param name="order" type="select" label="Interpolation method">
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37 <option value="0">Nearest-neighbor</option>
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38 <option value="1" selected="true">Bi-linear</option>
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39 <option value="2">Bi-cubic</option>
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40 </param>
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41 </inputs>
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42 <outputs>
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43 <data format="png" name="output"/>
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44 </outputs>
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45 <tests>
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46 <test>
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47 <param name="input" value="sample1.png"/> <!--continue here-->
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48 <param name="use_scale_option.use_scale" value="false"/>
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49 <param name="use_scale_option.scale_x" value="200"/>
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50 <param name="use_scale_option.scale_y" value="150"/>
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51 <param name="order" value="0"/>
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52 <output name="output" value="out2.png" ftype="png" compare="sim_size"/>
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53 </test>
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54 </tests>
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55 <help>This tool scales an image using the scaling factor.</help>
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56 <citations>
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57 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
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58 </citations>
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59 </tool>