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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 93ea9182520077ff74f6b7e4eba70ec4bf9cdc4c
author thomaswollmann
date Thu, 02 Mar 2017 03:10:27 -0500
parents cc77c9bf7b4a
children
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cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
parents:
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1 <measurement>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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2 <fixed-image filename="sample.tif" nonzeropoints="0" intersection="86495"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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3 <moving-image filename="sample.tif" nonzeropoints="0" intersection="86495"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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4 <metrics>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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5 <DICE name="Dice Coefficient (F1-Measure)" symbol="DICE" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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6 <JACRD name="Jaccard Coefficient" symbol="JACRD" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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7 <AUC name="Area under ROC Curve" symbol="AUC" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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8 <KAPPA name="Cohen Kappa" symbol="KAPPA" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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9 <RNDIND name="Rand Index" symbol="RNDIND" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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10 <ADJRIND name="Adjusted Rand Index" symbol="ADJRIND" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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11 <ICCORR name="Interclass Correlation" symbol="ICCORR" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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12 <VOLSMTY name="Volumetric Similarity Coefficient" symbol="VOLSMTY" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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13 <MUTINF name="Mutual Information" symbol="MUTINF" type="similarity" value="0.984545"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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14 <HDRFDST name="Hausdorff Distance" symbol="HDRFDST" type="distance" value="0.000000" executiontime="10"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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15 <AVGDIST name="Average Hausdorff Distance" symbol="AVGDIST" type="distance" value="0.000000" executiontime="10"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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16 <MAHLNBS name="Mahanabolis Distance" symbol="MAHLNBS" type="distance" value="0.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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17 <VARINFO name="Variation of Information" symbol="VARINFO" type="distance" value="-0.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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18 <GCOERR name="Global Consistency Error" symbol="GCOERR" type="distance" value="0.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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19 <PROBDST name="Probabilistic Distance" symbol="PROBDST" type="distance" value="0.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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20 <SNSVTY name="Sensitivity (Recall, true positive rate)" symbol="SNSVTY" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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21 <SPCFTY name="Specificity (true negative rate)" symbol="SPCFTY" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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22 <PRCISON name="Precision (Confidence)" symbol="PRCISON" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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23 <FMEASR name="F-Measure" symbol="FMEASR" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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24 <ACURCY name="Accuracy" symbol="ACURCY" type="similarity" value="1.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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25 <FALLOUT name="Fallout (false positive rate)" symbol="FALLOUT" type="distance" value="0.000000"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
thomaswollmann
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26 </metrics>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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27 <time total-executiontime="80"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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28 <dimention max_x="328" max_y="264" max_z="0"/>
cc77c9bf7b4a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
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29 </measurement>