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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 93ea9182520077ff74f6b7e4eba70ec4bf9cdc4c
author thomaswollmann
date Thu, 02 Mar 2017 03:10:27 -0500
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e542633095b7 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 93ea9182520077ff74f6b7e4eba70ec4bf9cdc4c
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1 <tool id="visceral_evaluatesegmentation" name="Visceral - Evaluate Segmentation" version="0.5">
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2 <description>Evaluate Segmentation</description>
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3 <requirements>
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4 <requirement type="package">visceral-evaluatesegmentation</requirement>
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5 </requirements>
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6 <stdio>
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7 <exit_code level="fatal" range="1:"/>
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8 </stdio>
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9 <command>
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10 <![CDATA[
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11 EvaluateSegmentation '$gt_path' '$seg_path' -xml '$output'
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12 ]]>
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13 </command>
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14 <inputs>
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15 <param name="gt_path" type="data" format="tiff,png,jpg,bmp" label="Ground Truth Image"/>
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16 <param name="seg_path" type="data" format="tiff,png,jpg,bmp" label="Segmented Image"/>
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17 </inputs>
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18 <outputs>
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19 <data format="xml" name="output"/>
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="gt_path" value="sample.png" />
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24 <param name="seg_path" value="sample.png" />
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25 <output name="output" value="out.xml" ftype="xml" lines_diff="10" />
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26 </test>
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27 </tests>
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28 <help>Calculates Metrics for Evaluating Image Segmentation</help>
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29 <citations>
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30 <citation type="bibtex">@article{TA2015,
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31 author = {Abdel Aziz Taha and Allan Hanbury},
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32 title = {Metrics for Evaluating 3{D} Medical Image Segmentation: analysis, selection, and tool},
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33 journal = {BMC Medical Imaging},
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34 year = {2015},
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35 volume = {15},
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36 pages = {29},
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37 month = {August},
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38 }</citation>
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39 </citations>
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40 </tool>