Mercurial > repos > thomaswollmann > visceral_evaluatesegmentation
comparison visceral-evaluatesegmentation.xml @ 0:cc77c9bf7b4a draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
| author | thomaswollmann |
|---|---|
| date | Thu, 16 Feb 2017 05:18:42 -0500 |
| parents | |
| children | e542633095b7 |
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| -1:000000000000 | 0:cc77c9bf7b4a |
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| 1 <tool id="visceral_evaluatesegmentation" name="Visceral - Evaluate Segmentation" version="0.4"> | |
| 2 <description>Evaluate Segmentation</description> | |
| 3 <requirements> | |
| 4 <requirement type="package">visceral-evaluatesegmentation</requirement> | |
| 5 </requirements> | |
| 6 <command> | |
| 7 <![CDATA[ | |
| 8 EvaluateSegmentation '$gt_path' '$seg_path' -xml '$output' | |
| 9 ]]> | |
| 10 </command> | |
| 11 <inputs> | |
| 12 <param name="gt_path" type="data" format="tiff,png,jpg,bmp" label="Ground Truth Image"/> | |
| 13 <param name="seg_path" type="data" format="tiff,png,jpg,bmp" label="Segmented Image"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="xml" name="output"/> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="gt_path" value="sample.png" /> | |
| 21 <param name="seg_path" value="sample.png" /> | |
| 22 <output name="output" value="out.xml" ftype="xml" lines_diff="10" /> | |
| 23 </test> | |
| 24 </tests> | |
| 25 <help>Calculates Metrics for Evaluating Image Segmentation</help> | |
| 26 <citations> | |
| 27 <citation type="bibtex">@article{TA2015, | |
| 28 author = {Abdel Aziz Taha and Allan Hanbury}, | |
| 29 title = {Metrics for Evaluating 3{D} Medical Image Segmentation: analysis, selection, and tool}, | |
| 30 journal = {BMC Medical Imaging}, | |
| 31 year = {2015}, | |
| 32 volume = {15}, | |
| 33 pages = {29}, | |
| 34 month = {August}, | |
| 35 }</citation> | |
| 36 </citations> | |
| 37 </tool> |