Mercurial > repos > thomaswollmann > visceral_evaluatesegmentation
diff visceral-evaluatesegmentation.xml @ 0:cc77c9bf7b4a draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit 84957f4ad2994ba9bf594d835e5ddd6bcb98c59f
author | thomaswollmann |
---|---|
date | Thu, 16 Feb 2017 05:18:42 -0500 |
parents | |
children | e542633095b7 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/visceral-evaluatesegmentation.xml Thu Feb 16 05:18:42 2017 -0500 @@ -0,0 +1,37 @@ +<tool id="visceral_evaluatesegmentation" name="Visceral - Evaluate Segmentation" version="0.4"> + <description>Evaluate Segmentation</description> + <requirements> + <requirement type="package">visceral-evaluatesegmentation</requirement> + </requirements> + <command> + <![CDATA[ + EvaluateSegmentation '$gt_path' '$seg_path' -xml '$output' + ]]> + </command> + <inputs> + <param name="gt_path" type="data" format="tiff,png,jpg,bmp" label="Ground Truth Image"/> + <param name="seg_path" type="data" format="tiff,png,jpg,bmp" label="Segmented Image"/> + </inputs> + <outputs> + <data format="xml" name="output"/> + </outputs> + <tests> + <test> + <param name="gt_path" value="sample.png" /> + <param name="seg_path" value="sample.png" /> + <output name="output" value="out.xml" ftype="xml" lines_diff="10" /> + </test> + </tests> + <help>Calculates Metrics for Evaluating Image Segmentation</help> + <citations> + <citation type="bibtex">@article{TA2015, + author = {Abdel Aziz Taha and Allan Hanbury}, + title = {Metrics for Evaluating 3{D} Medical Image Segmentation: analysis, selection, and tool}, + journal = {BMC Medical Imaging}, + year = {2015}, + volume = {15}, + pages = {29}, + month = {August}, +}</citation> + </citations> +</tool>