--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out.xml	Thu Feb 16 05:18:42 2017 -0500
@@ -0,0 +1,29 @@
+<measurement>
+  <fixed-image filename="sample.tif" nonzeropoints="0" intersection="86495"/>
+  <moving-image filename="sample.tif" nonzeropoints="0" intersection="86495"/>
+  <metrics>
+    <DICE name="Dice Coefficient (F1-Measure)" symbol="DICE" type="similarity" value="1.000000"/>
+    <JACRD name="Jaccard Coefficient" symbol="JACRD" type="similarity" value="1.000000"/>
+    <AUC name="Area under ROC Curve" symbol="AUC" type="similarity" value="1.000000"/>
+    <KAPPA name="Cohen Kappa" symbol="KAPPA" type="similarity" value="1.000000"/>
+    <RNDIND name="Rand Index" symbol="RNDIND" type="similarity" value="1.000000"/>
+    <ADJRIND name="Adjusted Rand Index" symbol="ADJRIND" type="similarity" value="1.000000"/>
+    <ICCORR name="Interclass Correlation" symbol="ICCORR" type="similarity" value="1.000000"/>
+    <VOLSMTY name="Volumetric Similarity Coefficient" symbol="VOLSMTY" type="similarity" value="1.000000"/>
+    <MUTINF name="Mutual Information" symbol="MUTINF" type="similarity" value="0.984545"/>
+    <HDRFDST name="Hausdorff Distance" symbol="HDRFDST" type="distance" value="0.000000" executiontime="10"/>
+    <AVGDIST name="Average Hausdorff Distance" symbol="AVGDIST" type="distance" value="0.000000" executiontime="10"/>
+    <MAHLNBS name="Mahanabolis Distance" symbol="MAHLNBS" type="distance" value="0.000000"/>
+    <VARINFO name="Variation of Information" symbol="VARINFO" type="distance" value="-0.000000"/>
+    <GCOERR name="Global Consistency Error" symbol="GCOERR" type="distance" value="0.000000"/>
+    <PROBDST name="Probabilistic Distance" symbol="PROBDST" type="distance" value="0.000000"/>
+    <SNSVTY name="Sensitivity (Recall, true positive rate)" symbol="SNSVTY" type="similarity" value="1.000000"/>
+    <SPCFTY name="Specificity (true negative rate)" symbol="SPCFTY" type="similarity" value="1.000000"/>
+    <PRCISON name="Precision (Confidence)" symbol="PRCISON" type="similarity" value="1.000000"/>
+    <FMEASR name="F-Measure" symbol="FMEASR" type="similarity" value="1.000000"/>
+    <ACURCY name="Accuracy" symbol="ACURCY" type="similarity" value="1.000000"/>
+    <FALLOUT name="Fallout (false positive rate)" symbol="FALLOUT" type="distance" value="0.000000"/>
+  </metrics>
+  <time total-executiontime="80"/>
+  <dimention max_x="328" max_y="264" max_z="0"/>
+</measurement>

Binary file test-data/sample.png has changed

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/visceral-evaluatesegmentation.xml	Thu Feb 16 05:18:42 2017 -0500
@@ -0,0 +1,37 @@
+<tool id="visceral_evaluatesegmentation" name="Visceral - Evaluate Segmentation" version="0.4">
+  <description>Evaluate Segmentation</description>
+  <requirements>
+    <requirement type="package">visceral-evaluatesegmentation</requirement>
+  </requirements>
+  <command>
+        <![CDATA[
+		EvaluateSegmentation '$gt_path' '$seg_path' -xml '$output'
+        ]]>
+  </command>
+  <inputs>
+    <param name="gt_path" type="data" format="tiff,png,jpg,bmp" label="Ground Truth Image"/>
+    <param name="seg_path" type="data" format="tiff,png,jpg,bmp" label="Segmented Image"/>
+  </inputs>
+  <outputs>
+    <data format="xml" name="output"/>
+  </outputs>
+  <tests>
+    <test>
+	    <param name="gt_path" value="sample.png" />
+	    <param name="seg_path" value="sample.png" />
+	    <output name="output" value="out.xml" ftype="xml" lines_diff="10" />
+    </test>
+  </tests>
+  <help>Calculates Metrics for Evaluating Image Segmentation</help>
+  <citations>
+	  <citation type="bibtex">@article{TA2015,
+    author = {Abdel Aziz Taha and Allan Hanbury},
+    title = {Metrics for Evaluating 3{D} Medical Image Segmentation: analysis, selection, and tool},
+    journal = {BMC Medical Imaging},
+    year = {2015},
+    volume = {15},
+    pages = {29},
+    month = {August},
+}</citation>
+  </citations>
+</tool>