Mercurial > repos > thondeboer > neat_genreads

comparison genMutModel.xml @ 10:7d10b55965c9 draft default tip

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planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty
author thondeboer
date Wed, 16 May 2018 17:02:51 -0400
parents 441103f02a11
children
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9:441103f02a11 10:7d10b55965c9
48 <when value="built-in"> 48 <when value="built-in">
49 <param name="reference" 49 <param name="reference"
50 type="select" 50 type="select"
51 label="Select a built-in reference sequence" 51 label="Select a built-in reference sequence"
52 help="The reference sequence that will be used as the basis for the simulated reads"> 52 help="The reference sequence that will be used as the basis for the simulated reads">
53 <options from_data_table="all_fasta" /> 53 <options from_data_table="fasta_indexes" />
54 </param> 54 </param>
55 </when> 55 </when>
56 <when value="history"> 56 <when value="history">
57 <param name="reference" 57 <param name="reference"
58 type="data" 58 type="data"
178 </section> 178 </section>
179 <output name="genMutModel_modelfile" value="chrMT-PE-VCF-BAM-BOOLEANS-genMutModel.p" compare="diff"/> 179 <output name="genMutModel_modelfile" value="chrMT-PE-VCF-BAM-BOOLEANS-genMutModel.p" compare="diff"/>
180 <output name="trinuc_file" value="chrMT.fa.trinucCounts" compare="diff"/> 180 <output name="trinuc_file" value="chrMT.fa.trinucCounts" compare="diff"/>
181 </test> 181 </test>
182 182
183 <test>
184 <conditional name="in_type">
185 <param name="input_type" value="built-in"/>
186 <param name="reference" value="hg19chrmt" format="fasta">
187 <options from_data_table="fasta_indexes" />
188 </param>
189 </conditional>
190 <param name="mutation_file" value="chrMT-PE-VCF-BAM.vcf"/>
191 <output name="genMutModel_modelfile" value="chrMT-PE-VCF-BAM-genMutModel.p" compare="diff"/>
192 </test>
193
183 </tests> 194 </tests>
184 </tool> 195 </tool>