Mercurial > repos > tiagoantao > package_raxml_8_2_4

changeset 0:25be7ee8d4b6 draft default tip

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planemo upload commit 2c71c5e5604b9c05648b883fddbb163a8e03c807
author tiagoantao
date Tue, 03 Nov 2015 16:26:44 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Nov 03 16:26:44 2015 -0500
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="raxml" version="8.2.4">
+    <install version="1.0">
+      <actions>
+        <!-- Download source code -->
+        <action type="download_by_url" target_filename="standard-RAxML-8.2.4.tar.gz">https://github.com/stamatak/standard-RAxML/archive/v8.2.4.tar.gz</action>
+
+        <!-- Build raxml -->
+        <action type="shell_command">make -f Makefile.PTHREADS.gcc</action>
+
+        <!-- Install raxml -->
+        <action type="shell_command">mkdir -p $INSTALL_DIR/bin</action>
+        <action type="shell_command">cp raxmlHPC-PTHREADS $INSTALL_DIR/bin</action>
+
+        <!-- Set environment for dependent repositories -->
+        <action type="set_environment">
+          <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+        </action>
+      </actions>
+    </install>
+  </package>
+</tool_dependency>