Mercurial > repos > tiagoantao > package_stacks_1_35

changeset 0:a277203b991f draft default tip

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author tiagoantao
date Wed, 10 Feb 2016 14:02:31 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Feb 10 14:02:31 2016 -0500
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="stacks" version="1.35">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://creskolab.uoregon.edu/stacks/source/stacks-1.35.tar.gz</action>
+		<action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
+		<action type="shell_command">make</action>
+                <action type="shell_command">make install</action>
+		<!-- create env.sh -->
+                <action type="set_environment">
+                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/</environment_variable>
+                        <environment_variable name="INSTALL_DIR" action="set_to">$INSTALL_DIR/</environment_variable>
+                </action>
+ 
+           </actions>
+
+        </install>
+        <readme>
+            This package installs STACKS from the sources available. Based on Cyril Monjeuad version
+        </readme>
+    </package>
+</tool_dependency>