|
4
|
1 <tool id="GaussianSmoother" name="Gaussian smooth" version="1.0.0">
|
|
|
2 <description>a (Big)Wig file</description>
|
|
|
3 <command interpreter="sh">galaxyToolRunner.sh wigmath.MovingAverageSmooth -i $input -w $W -o $output</command>
|
|
|
4 <inputs>
|
|
|
5 <param name="input" type="data" format="bigwig,wig" label="Smooth the data in" />
|
|
|
6 <param name="W" type="integer" value="20" optional="true" label="Width of the moving average in base pairs" />
|
|
|
7 </inputs>
|
|
|
8 <outputs>
|
|
|
9 <data format="wig" name="output" metadata_source="input" />
|
|
|
10 </outputs>
|
|
|
11 <tests>
|
|
|
12 <!--<test>
|
|
|
13 <param name="input" value="test.wig"/>
|
|
|
14 <param name="dbkey" value="sacCer2"/>
|
|
|
15 <param name="S" value="20"/>
|
|
|
16 <param name="W" value="3"/>
|
|
|
17 <output name="output" file="smoother.output1"/>
|
|
|
18 </test>
|
|
|
19 <test>
|
|
|
20 <param name="input" value="test.bw"/>
|
|
|
21 <param name="dbkey" value="sacCer2"/>
|
|
|
22 <param name="S" value="20"/>
|
|
|
23 <param name="W" value="3"/>
|
|
|
24 <output name="output" file="smoother.output1"/>
|
|
|
25 </test>
|
|
|
26 <test>
|
|
|
27 <param name="input" value="test.wig"/>
|
|
|
28 <param name="dbkey" value="sacCer2"/>
|
|
|
29 <param name="S" value="10"/>
|
|
|
30 <param name="W" value="2"/>
|
|
|
31 <output name="output" file="smoother.output2"/>
|
|
|
32 </test>
|
|
|
33 <test>
|
|
|
34 <param name="input" value="test.bw"/>
|
|
|
35 <param name="dbkey" value="sacCer2"/>
|
|
|
36 <param name="S" value="10"/>
|
|
|
37 <param name="W" value="2"/>
|
|
|
38 <output name="output" file="smoother.output2"/>
|
|
|
39 </test>
|
|
|
40 <test>
|
|
|
41 <param name="input" value="test.wig"/>
|
|
|
42 <param name="dbkey" value="sacCer2"/>
|
|
|
43 <param name="S" value="50"/>
|
|
|
44 <param name="W" value="1"/>
|
|
|
45 <output name="output" file="smoother.output3"/>
|
|
|
46 </test>
|
|
|
47 <test>
|
|
|
48 <param name="input" value="test.bw"/>
|
|
|
49 <param name="dbkey" value="sacCer2"/>
|
|
|
50 <param name="S" value="5"/>
|
|
|
51 <param name="W" value="1"/>
|
|
|
52 <output name="output" file="smoother.output3"/>
|
|
|
53 </test>-->
|
|
|
54 </tests>
|
|
|
55
|
|
|
56 <help>
|
|
|
57 </help>
|
|
|
58 </tool>
|
