Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/PairOverlappingNucleosomes.xml @ 21:51b28ce6ef7e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Improve file type autodetection
author timpalpant
date Mon, 18 Jun 2012 14:50:31 -0400
parents b2a69d34385a
children b43c420a6135
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
1 <tool id="PairNukes" name="Pair nucleosomes" version="1.0.0">
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
2 <description>by overlap</description>
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.PairOverlappingNucleosomes -a $input1 -b $input2 -m $N -o $output</command>
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
4 <inputs>
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
5 <param name="input1" type="data" format="tabular" label="Nucleosome calls 1" />
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
6 <param name="input2" type="data" format="tabular" label="Nucleosome calls 2" />
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
7 <param name="N" type="integer" value="73" label="Minimum overlap (bp)" />
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
8 </inputs>
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
9 <outputs>
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
10 <data name="output" format="tabular" />
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
11 </outputs>
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
12
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
13 <help>
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
14
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
15 This tool will pair overlapping nucleosomes from two sets of nucleosome calls. In the event that multiple calls overlap, the one with the largest overlap is selected as a match.
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
16
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
17 </help>
b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff changeset
18 </tool>