Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/StripMatrix.xml @ 21:51b28ce6ef7e draft

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author timpalpant
date Mon, 18 Jun 2012 14:50:31 -0400
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children b43c420a6135
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1 <tool id="StripMatrix" name="Strip headers" version="1.1.0">
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2 <description>from an aligned matrix</description>
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3 <command interpreter="sh">galaxyToolRunner.sh visualization.StripMatrix -i $input -o $output</command>
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4 <inputs>
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5 <param format="tabular" name="input" type="data" label="Aligned matrix" />
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6 </inputs>
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7 <outputs>
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8 <data format="tabular" name="output" metadata="input" />
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9 </outputs>
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10 <tests>
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11 <test>
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12 <param name="input" value="test.matrix2png.txt"/>
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13 <output name="output" file="stripMatrix.txt"/>
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14 </test>
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15 </tests>
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16
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17 <help>
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18
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19 This tool is intended to strip the column/row headers off of an aligned matrix (in matrix2png format) for easy import into Matlab or other software where only the data values are required. It removes the first row and first column from a tabular file.
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20
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21 -----
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22
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23 **Example**
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24
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25 If the following tabular matrix is used as input ::
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27 ID col1 col2 col3
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28 row1 2 4 5
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29 row2 5 1 1
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30
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31 then the following tabular matrix will be produced as output ::
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32
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33 2 4 5
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34 5 1 1
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36 </help>
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37 </tool>