Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/PairOverlappingNucleosomes.xml @ 22:727fbba02ef7 draft

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Fix a bug in GeneTrackToWig where +/- strands were not merged correctly. Add option to vary the chunk size of tools that process chromosomes in chunks.
author timpalpant
date Tue, 19 Jun 2012 22:09:23 -0400
parents b2a69d34385a
children b43c420a6135
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b2a69d34385a Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
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1 <tool id="PairNukes" name="Pair nucleosomes" version="1.0.0">
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2 <description>by overlap</description>
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3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.PairOverlappingNucleosomes -a $input1 -b $input2 -m $N -o $output</command>
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4 <inputs>
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5 <param name="input1" type="data" format="tabular" label="Nucleosome calls 1" />
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6 <param name="input2" type="data" format="tabular" label="Nucleosome calls 2" />
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7 <param name="N" type="integer" value="73" label="Minimum overlap (bp)" />
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8 </inputs>
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9 <outputs>
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10 <data name="output" format="tabular" />
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11 </outputs>
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12
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13 <help>
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15 This tool will pair overlapping nucleosomes from two sets of nucleosome calls. In the event that multiple calls overlap, the one with the largest overlap is selected as a match.
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16
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17 </help>
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18 </tool>