Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/StripMatrix.xml @ 22:727fbba02ef7 draft

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Fix a bug in GeneTrackToWig where +/- strands were not merged correctly. Add option to vary the chunk size of tools that process chromosomes in chunks.
author timpalpant
date Tue, 19 Jun 2012 22:09:23 -0400
parents 9d56b5b85740
children b43c420a6135
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1 <tool id="StripMatrix" name="Strip headers" version="1.1.0">
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2 <description>from an aligned matrix</description>
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3 <command interpreter="sh">galaxyToolRunner.sh visualization.StripMatrix -i $input -o $output</command>
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4 <inputs>
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5 <param format="tabular" name="input" type="data" label="Aligned matrix" />
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6 </inputs>
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7 <outputs>
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8 <data format="tabular" name="output" metadata="input" />
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9 </outputs>
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10 <tests>
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11 <test>
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12 <param name="input" value="test.matrix2png.txt"/>
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13 <output name="output" file="stripMatrix.txt"/>
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14 </test>
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15 </tests>
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17 <help>
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19 This tool is intended to strip the column/row headers off of an aligned matrix (in matrix2png format) for easy import into Matlab or other software where only the data values are required. It removes the first row and first column from a tabular file.
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20
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21 -----
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22
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23 **Example**
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24
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25 If the following tabular matrix is used as input ::
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27 ID col1 col2 col3
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28 row1 2 4 5
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29 row2 5 1 1
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30
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31 then the following tabular matrix will be produced as output ::
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32
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33 2 4 5
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34 5 1 1
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36 </help>
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37 </tool>