Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/Subtract.xml @ 12:81d5b81fb3c2 draft

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Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
author timpalpant
date Wed, 25 Apr 2012 16:53:48 -0400
parents 4b32ed5d4a1b
children 3e477c7e0e73
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1 <tool id="WigSubtract" name="Subtract" version="1.0.0">
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2 <description>two (Big)Wig files</description>
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3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Subtract -m $minuend -s $subtrahend -o $output</command>
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4 <inputs>
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5 <param format="bigwig,wig" name="minuend" type="data" label="File 1 (minuend / top)" />
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6 <param format="bigwig,wig" name="subtrahend" type="data" label="File 2 (subtrahend / bottom)" />
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7 </inputs>
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8 <outputs>
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9 <data format="wig" name="output" metadata_source="minuend" />
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10 </outputs>
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11 <tests>
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12 <!--<test>
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13 <param name="minuend" value="wigmath.input1"/>
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14 <param name="subtrahend" value="wigmath.input2"/>
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15 <param name="dbkey" value="sacCer2"/>
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16 <output name="output" file="difference.output"/>
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17 </test>
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18 <test>
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19 <param name="minuend" value="wigmath.input1.bw"/>
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20 <param name="subtrahend" value="wigmath.input2"/>
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21 <param name="dbkey" value="sacCer2"/>
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22 <output name="output" file="difference.output"/>
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23 </test>
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24 <test>
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25 <param name="minuend" value="wigmath.input1"/>
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26 <param name="subtrahend" value="wigmath.input2.bw"/>
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27 <param name="dbkey" value="sacCer2"/>
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28 <output name="output" file="difference.output"/>
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29 </test>
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30 <test>
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31 <param name="minuend" value="wigmath.input1.bw"/>
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32 <param name="subtrahend" value="wigmath.input2.bw"/>
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33 <param name="dbkey" value="sacCer2"/>
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34 <output name="output" file="difference.output"/>
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35 </test>-->
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36 </tests>
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37
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38 <help>
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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40 This tool will subtract the values in one Wig file from another, base pair by base pair.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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42 .. class:: infomark
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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44 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
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46 </help>
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47 </tool>