Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/Add.xml @ 17:ace7855c1017 draft

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Add back tool_data_table_conf.xml.sample since apparently it's still needed.
author timpalpant
date Sat, 09 Jun 2012 16:10:42 -0400
parents 3e477c7e0e73
children
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3e477c7e0e73 Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
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1 <tool id="WigAdd" name="Add" version="1.1.0">
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2 <description>multiple (Big)Wig files</description>
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3 <command interpreter="sh">
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4 galaxyToolRunner.sh wigmath.Add -o $output
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5 #for $input in $inputs
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6 ${input.file}
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7 #end for
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8 </command>
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9 <inputs>
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10 <repeat name="inputs" title="(Big)Wig file">
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11 <param name="file" type="data" format="bigwig,wig" />
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12 </repeat>
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13 </inputs>
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14 <outputs>
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15 <data format="wig" name="output" />
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16 </outputs>
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17
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18 <help>
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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20 This tool will add all values in the specified Wig files base pair by base pair.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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22 .. class:: infomark
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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24 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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25
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26 </help>
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27 </tool>