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1 <tool id="CallNukes" name="Call Nucleosomes" version="1.0.0">
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2 <description>in an MNase experiment</description>
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3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.GreedyCaller -d $dyads -s $smoothed -n $N -o $output</command>
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4 <inputs>
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5 <param name="dyads" type="data" format="bigwig,wig" label="Dyad counts" />
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6 <param name="smoothed" type="data" format="bigwig,wig" label="Smoothed dyad counts" />
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7 <param name="N" type="integer" value="147" optional="true" label="Assumed nucleosome size" />
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8 </inputs>
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9 <outputs>
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10 <data name="output" format="tabular" />
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11 </outputs>
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12
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13 <help>
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14 .. class:: warningmark
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15
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16 This tool requires dyad counts and smoothed dyad counts.
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17 </help>
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18 </tool>
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