|
4
|
1 <tool id="CallNukes" name="Call Nucleosomes" version="1.0.0">
|
|
|
2 <description>in an MNase experiment</description>
|
|
|
3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.GreedyCaller -d $dyads -s $smoothed -n $N -o $output</command>
|
|
|
4 <inputs>
|
|
|
5 <param name="dyads" type="data" format="bigwig,wig" label="Dyad counts" />
|
|
|
6 <param name="smoothed" type="data" format="bigwig,wig" label="Smoothed dyad counts" />
|
|
|
7 <param name="N" type="integer" value="147" optional="true" label="Assumed nucleosome size" />
|
|
|
8 </inputs>
|
|
|
9 <outputs>
|
|
|
10 <data name="output" format="tabular" />
|
|
|
11 </outputs>
|
|
|
12
|
|
|
13 <help>
|
|
|
14 .. class:: warningmark
|
|
|
15
|
|
|
16 This tool requires dyad counts and smoothed dyad counts.
|
|
|
17
|
|
|
18 .. class:: warningmark
|
|
|
19
|
|
|
20 This tool was contributed by Timothy Palpant.
|
|
|
21 </help>
|
|
|
22 </tool>
|
