annotate galaxy-conf/Scale.xml @ 10:d063d22f4e80

Uploaded
author timpalpant
date Sat, 17 Mar 2012 08:11:55 -0400
parents 4b32ed5d4a1b
children 81d5b81fb3c2
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
1 <tool id="WigScale" name="Scale" version="1.0.0">
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
2 <description>a (Big)Wig file</description>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Scale -i $input -m $M -o $output</command>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
4 <inputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
5 <param format="bigwig,wig" name="input" type="data" label="Scale the data in" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
6 <param name="M" type="float" value="0" label="Multiply by (leave 0 to scale by 1/mean)" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
7 </inputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
8 <outputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
9 <data format="wig" name="output" metadata_source="input" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
10 </outputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
11 <tests>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
12 <!--<test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
13 <param name="input" value="wigmath.input1"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
14 <param name="T" value="0"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
15 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
16 <output name="output" file="percenter.output1"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
17 </test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
18 <test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
19 <param name="input" value="wigmath.input1.bw"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
20 <param name="T" value="0"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
21 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
22 <output name="output" file="percenter.output1"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
23 </test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
24 <test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
25 <param name="input" value="wigmath.input2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
26 <param name="T" value="2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
27 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
28 <output name="output" file="percenter.output2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
29 </test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
30 <test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
31 <param name="input" value="wigmath.input2.bw"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
32 <param name="T" value="2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
33 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
34 <output name="output" file="percenter.output2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
35 </test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
36 <test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
37 <param name="input" value="wigmath.input3"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
38 <param name="T" value="1000000"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
39 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
40 <output name="output" file="percenter.output3"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
41 </test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
42 <test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
43 <param name="input" value="wigmath.input3.bw"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
44 <param name="T" value="1000000"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
45 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
46 <output name="output" file="percenter.output3"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
47 </test>-->
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
48 </tests>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
49
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
50 <help>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
51 </help>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
52 </tool>