Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/Average.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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1 <tool id="WigAvg" name="Average" version="1.0.0">
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2 <description>multiple (Big)Wig files</description>
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3 <command interpreter="sh">
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4 galaxyToolRunner.sh wigmath.Average -o $output $file1 $file2
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5 #for $input in $inputs
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6 ${input.file}
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7 #end for
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8 </command>
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9 <inputs>
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10 <param name="file1" label="(Big)Wig file 1" type="data" format="bigwig,wig" />
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11 <param name="file2" label="(Big)Wig file 2" type="data" format="bigwig,wig" />
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12 <repeat name="inputs" title="Additional (Big)Wig file">
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13 <param name="file" type="data" format="bigwig,wig" />
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14 </repeat>
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15 </inputs>
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16 <outputs>
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17 <data format="wig" name="output" />
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18 </outputs>
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19 <tests>
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20 <!-- TODO -->
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21 </tests>
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23
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24 <help>
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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26 This tool will average the values of the provided Wig files, base pair by base pair.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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28 .. class:: infomark
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81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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30 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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32 </help>
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33 </tool>