Mercurial > repos > timpalpant > java_genomics_toolkit
annotate galaxy-conf/Shift.xml @ 13:eb53be9a09f4 draft
Uploaded
author | timpalpant |
---|---|
date | Sat, 19 May 2012 10:36:45 -0400 |
parents | 81d5b81fb3c2 |
children | 3e477c7e0e73 |
rev | line source |
---|---|
12
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
1 <tool id="WigShift" name="Mean shift" version="1.0.0"> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
2 <description>a (Big)Wig file</description> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Shift -i $input -m $M -o $output</command> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
4 <inputs> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
5 <param format="bigwig,wig" name="input" type="data" label="Shift the data in" /> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
6 <param name="M" type="float" value="0" label="To have mean" /> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
7 </inputs> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
8 <outputs> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
9 <data format="wig" name="output" metadata_source="input" /> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
10 </outputs> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
11 <help> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
12 |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
13 This tool will shift all values in a Wig file by a scalar so that the output has the desired mean. |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
14 |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
15 .. class:: infomark |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
16 |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
17 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly. |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
18 |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
19 </help> |
81d5b81fb3c2
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents:
diff
changeset
|
20 </tool> |