Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/StripMatrix.xml @ 13:eb53be9a09f4 draft

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author timpalpant
date Sat, 19 May 2012 10:36:45 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
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1 <tool id="StripMatrix" name="Strip headers" version="1.0.0">
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2 <description>from an aligned matrix</description>
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3 <command interpreter="sh">galaxyToolRunner.sh visualization.StripMatrix -i $input -o $output</command>
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4 <inputs>
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5 <param format="tabular" name="input" type="data" label="Aligned matrix" />
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6 </inputs>
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7 <outputs>
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8 <data format="tabular" name="output" metadata="input" />
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9 </outputs>
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10 <tests>
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11 <test>
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12 <param name="input" value="test.matrix2png.txt"/>
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13 <output name="output" file="stripMatrix.txt"/>
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14 </test>
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15 </tests>
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17 <help>
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19 This tool is intended to strip the column/row headers off of an aligned matrix (in matrix2png format) for easy import into Matlab or other software where only the data values are required. It removes the first row and first column from a tabular file.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
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21 -----
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23 **Example**
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25 If the following tabular matrix is used as input ::
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27 ID col1 col2 col3
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29 row2 5 1 1
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31 then the following tabular matrix will be produced as output ::
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36 </help>
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37 </tool>