Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/Subtract.xml @ 14:f58706d4d421 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author timpalpant
date Sat, 19 May 2012 10:40:16 -0400
parents 81d5b81fb3c2
children 3e477c7e0e73
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
1 <tool id="WigSubtract" name="Subtract" version="1.0.0">
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
2 <description>two (Big)Wig files</description>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Subtract -m $minuend -s $subtrahend -o $output</command>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
4 <inputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
5 <param format="bigwig,wig" name="minuend" type="data" label="File 1 (minuend / top)" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
6 <param format="bigwig,wig" name="subtrahend" type="data" label="File 2 (subtrahend / bottom)" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
7 </inputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
8 <outputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
9 <data format="wig" name="output" metadata_source="minuend" />
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
10 </outputs>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
11 <tests>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
12 <!--<test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
13 <param name="minuend" value="wigmath.input1"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
14 <param name="subtrahend" value="wigmath.input2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
15 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
16 <output name="output" file="difference.output"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
17 </test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
18 <test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
19 <param name="minuend" value="wigmath.input1.bw"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
20 <param name="subtrahend" value="wigmath.input2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
21 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
22 <output name="output" file="difference.output"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
23 </test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
24 <test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
25 <param name="minuend" value="wigmath.input1"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
26 <param name="subtrahend" value="wigmath.input2.bw"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
27 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
28 <output name="output" file="difference.output"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
29 </test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
30 <test>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
31 <param name="minuend" value="wigmath.input1.bw"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
32 <param name="subtrahend" value="wigmath.input2.bw"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
33 <param name="dbkey" value="sacCer2"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
34 <output name="output" file="difference.output"/>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
35 </test>-->
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
36 </tests>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
37
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
38 <help>
12
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents: 4
diff changeset
39
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents: 4
diff changeset
40 This tool will subtract the values in one Wig file from another, base pair by base pair.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents: 4
diff changeset
41
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents: 4
diff changeset
42 .. class:: infomark
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents: 4
diff changeset
43
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents: 4
diff changeset
44 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
81d5b81fb3c2 Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
timpalpant
parents: 4
diff changeset
45
4
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
46 </help>
4b32ed5d4a1b Uploaded
timpalpant
parents:
diff changeset
47 </tool>