Mercurial > repos > timpalpant > java_genomics_toolkit
annotate galaxy-conf/PairOverlappingNucleosomes.xml @ 25:b43c420a6135 draft default tip
Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author | timpalpant |
---|---|
date | Sat, 09 Feb 2019 14:02:24 -0500 |
parents | b2a69d34385a |
children |
rev | line source |
---|---|
18
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
1 <tool id="PairNukes" name="Pair nucleosomes" version="1.0.0"> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
2 <description>by overlap</description> |
25
b43c420a6135
Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
timpalpant
parents:
18
diff
changeset
|
3 <command interpreter="bash">galaxyToolRunner.sh nucleosomes.PairOverlappingNucleosomes -a $input1 -b $input2 -m $N -o $output</command> |
18
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
4 <inputs> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
5 <param name="input1" type="data" format="tabular" label="Nucleosome calls 1" /> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
6 <param name="input2" type="data" format="tabular" label="Nucleosome calls 2" /> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
7 <param name="N" type="integer" value="73" label="Minimum overlap (bp)" /> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
8 </inputs> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
9 <outputs> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
10 <data name="output" format="tabular" /> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
11 </outputs> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
12 |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
13 <help> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
14 |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
15 This tool will pair overlapping nucleosomes from two sets of nucleosome calls. In the event that multiple calls overlap, the one with the largest overlap is selected as a match. |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
16 |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
17 </help> |
b2a69d34385a
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool.
timpalpant
parents:
diff
changeset
|
18 </tool> |