Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/Shift.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents a77e126ae856
children
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1 <tool id="WigShift" name="Mean shift" version="1.2.0">
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2 <description>a (Big)Wig file</description>
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b43c420a6135 Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
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3 <command interpreter="bash">galaxyToolRunner.sh wigmath.Shift -i $input -m $M $chr -o $output</command>
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4 <inputs>
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5 <param format="bigwig,wig" name="input" type="data" label="Shift the data in" />
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6 <param name="M" type="float" value="0" label="To have mean" />
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7 <param name="chr" type="boolean" checked="false" truevalue="--bychr" falsevalue="" label="Mean-shift chromosomes individually" />
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8 </inputs>
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9 <outputs>
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10 <data format="wig" name="output" metadata_source="input" />
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11 </outputs>
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12 <help>
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14 This tool will shift all values in a Wig file by a scalar so that the output has the desired mean.
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16 .. class:: infomark
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18 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly.
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19
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20 </help>
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21 </tool>