Mercurial > repos > timpalpant > java_genomics_toolkit

annotate galaxy-conf/StripMatrix.xml @ 25:b43c420a6135 draft default tip

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
author timpalpant
date Sat, 09 Feb 2019 14:02:24 -0500
parents 9d56b5b85740
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1 <tool id="StripMatrix" name="Strip headers" version="1.1.0">
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2 <description>from an aligned matrix</description>
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b43c420a6135 Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9
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3 <command interpreter="bash">galaxyToolRunner.sh visualization.StripMatrix -i $input -o $output</command>
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4 <inputs>
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5 <param format="tabular" name="input" type="data" label="Aligned matrix" />
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6 </inputs>
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7 <outputs>
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8 <data format="tabular" name="output" metadata="input" />
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9 </outputs>
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10 <tests>
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11 <test>
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12 <param name="input" value="test.matrix2png.txt"/>
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13 <output name="output" file="stripMatrix.txt"/>
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14 </test>
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15 </tests>
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16
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17 <help>
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18
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19 This tool is intended to strip the column/row headers off of an aligned matrix (in matrix2png format) for easy import into Matlab or other software where only the data values are required. It removes the first row and first column from a tabular file.
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20
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21 -----
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22
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23 **Example**
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25 If the following tabular matrix is used as input ::
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27 ID col1 col2 col3
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28 row1 2 4 5
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29 row2 5 1 1
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31 then the following tabular matrix will be produced as output ::
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33 2 4 5
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34 5 1 1
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36 </help>
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37 </tool>