Mercurial > repos > timpalpant > java_genomics_toolkit
comparison java-genomics-toolkit/galaxy-conf/BaseAlignCounts.xml @ 0:1daf3026d231
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| author | timpalpant |
|---|---|
| date | Mon, 13 Feb 2012 21:55:55 -0500 |
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| -1:000000000000 | 0:1daf3026d231 |
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| 1 <tool id="BaseAlignCounts" name="Map coverage" version="1.0.0"> | |
| 2 <description>of sequencing reads</description> | |
| 3 <command>galaxyToolRunner.sh -i $input -g $dbkey -x $X -p 4 -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="bam,sam,bed,bedgraph" label="Sequencing reads" /> | |
| 6 <param name="X" type="integer" value="0" label="In silico extension (leave 0 for read length)" /> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data name="output" format="wig" /> | |
| 10 </outputs> | |
| 11 | |
| 12 <help> | |
| 13 .. class:: warningmark | |
| 14 | |
| 15 This tool requires sequencing reads in SAM/BAM/Bed/BedGraph format. | |
| 16 | |
| 17 .. class:: warningmark | |
| 18 | |
| 19 This tool was contributed by Timothy Palpant. | |
| 20 </help> | |
| 21 </tool> |