Mercurial > repos > timpalpant > java_genomics_toolkit

comparison java-genomics-toolkit/gui/edu/unc/genomics/AssemblyManagerDialog.java @ 0:1daf3026d231

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Upload alpha version
author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
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-1:000000000000 0:1daf3026d231
1 package edu.unc.genomics;
2
3 import java.awt.BorderLayout;
4 import java.awt.FlowLayout;
5
6 import javax.swing.JButton;
7 import javax.swing.JDialog;
8 import javax.swing.JFileChooser;
9 import javax.swing.JFrame;
10 import javax.swing.JOptionPane;
11 import javax.swing.JPanel;
12 import javax.swing.JScrollPane;
13 import javax.swing.JTable;
14 import javax.swing.border.EmptyBorder;
15
16 import org.apache.log4j.Logger;
17
18 import java.awt.event.ActionListener;
19 import java.awt.event.ActionEvent;
20 import java.io.IOException;
21 import java.nio.file.Path;
22 import java.util.zip.DataFormatException;
23
24 /**
25 * View for AssemblyManager
26 *
27 * @author timpalpant
28 *
29 */
30 public class AssemblyManagerDialog extends JDialog {
31
32 public static final int DEFAULT_WIDTH = 400;
33 public static final int DEFAULT_HEIGHT = 500;
34
35 private static final long serialVersionUID = -1461628562713621064L;
36 private static final Logger log = Logger.getLogger(AssemblyManagerDialog.class);
37
38 private final JPanel contentPanel = new JPanel();
39 private final JFileChooser fcCustomAssembly = new JFileChooser();
40 private final JTable assembliesTable = new JTable();
41
42 private AssemblyTableModel model;
43
44 /**
45 * Create the dialog.
46 */
47 public AssemblyManagerDialog(JFrame parent) {
48 super(parent, "Assembly Manager", true);
49
50 setSize(DEFAULT_WIDTH, DEFAULT_HEIGHT);
51 int centeredX = parent.getX() + (parent.getWidth()-getWidth()) / 2;
52 int centeredY = parent.getY() + (parent.getHeight()-getHeight()) / 2;
53 setLocation(centeredX, centeredY);
54
55 getContentPane().setLayout(new BorderLayout());
56 contentPanel.setBorder(new EmptyBorder(5, 5, 5, 5));
57 getContentPane().add(contentPanel, BorderLayout.CENTER);
58 contentPanel.setLayout(new BorderLayout(0, 0));
59
60 // Initialize the assemblies list
61 model = new AssemblyTableModel(AssemblyManager.getAvailableAssemblies());
62 assembliesTable.setModel(model);
63 assembliesTable.setRowSelectionAllowed(true);
64 JScrollPane scrollPane = new JScrollPane(assembliesTable);
65 assembliesTable.setFillsViewportHeight(true);
66 contentPanel.add(scrollPane);
67
68 JPanel buttonPane = new JPanel();
69 buttonPane.setLayout(new FlowLayout(FlowLayout.RIGHT));
70 getContentPane().add(buttonPane, BorderLayout.SOUTH);
71
72 JButton removeAssemblyButton = new JButton("Remove");
73 removeAssemblyButton.setActionCommand("RemoveAssembly");
74 removeAssemblyButton.addActionListener(new ActionListener() {
75 public void actionPerformed(ActionEvent e) {
76 removeCustomAssembly();
77 }
78 });
79 buttonPane.add(removeAssemblyButton);
80
81 JButton loadAssemblyButton = new JButton("Load Custom Assembly");
82 loadAssemblyButton.setActionCommand("LoadAssembly");
83 loadAssemblyButton.addActionListener(new ActionListener() {
84 public void actionPerformed(ActionEvent e) {
85 loadCustomAssembly();
86 }
87 });
88 buttonPane.add(loadAssemblyButton);
89
90 JButton doneButton = new JButton("Done");
91 doneButton.setActionCommand("Done");
92 doneButton.addActionListener(new ActionListener() {
93 public void actionPerformed(ActionEvent e) {
94 closeDialog();
95 }
96 });
97 buttonPane.add(doneButton);
98 getRootPane().setDefaultButton(doneButton);
99 }
100
101 private void removeCustomAssembly() {
102 for (int row : assembliesTable.getSelectedRows()) {
103 try {
104 Assembly a = model.getRow(row);
105 AssemblyManager.deleteAssembly(a);
106 model.removeRow(row);
107 } catch (IOException e) {
108 log.error("Error deleting Assembly");
109 e.printStackTrace();
110 JOptionPane.showMessageDialog(this, "Error deleting assembly", "Assembly Manager Error", JOptionPane.ERROR_MESSAGE);
111 }
112 }
113 }
114
115 private void loadCustomAssembly() {
116 int returnVal = fcCustomAssembly.showOpenDialog(this);
117 if (returnVal == JFileChooser.APPROVE_OPTION) {
118 Path assemblyFile = fcCustomAssembly.getSelectedFile().toPath();
119 try {
120 Assembly a = AssemblyManager.loadCustomAssembly(assemblyFile);
121 // Add it to the assemblies list model
122 model.addAssembly(a);
123 } catch (IOException | DataFormatException e) {
124 log.error("Error loading custom assembly: " + assemblyFile);
125 e.printStackTrace();
126 JOptionPane.showMessageDialog(this, "Error loading custom assembly", "Assembly Manager Error", JOptionPane.ERROR_MESSAGE);
127 }
128 }
129 }
130
131 private void closeDialog() {
132 this.dispose();
133 }
134
135 }