Mercurial > repos > timpalpant > java_genomics_toolkit

comparison java-genomics-toolkit/gui/edu/unc/genomics/JobConfigPanel.java @ 0:1daf3026d231

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Upload alpha version
author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
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1 package edu.unc.genomics;
2
3 import java.awt.Color;
4 import java.awt.Component;
5 import java.awt.Dimension;
6 import java.awt.FileDialog;
7 import java.awt.event.ActionEvent;
8 import java.awt.event.ActionListener;
9 import java.lang.reflect.Field;
10 import java.nio.file.Path;
11 import java.util.HashMap;
12 import java.util.List;
13 import java.util.Map;
14
15 import javax.swing.BorderFactory;
16 import javax.swing.BoxLayout;
17 import javax.swing.ImageIcon;
18 import javax.swing.JButton;
19 import javax.swing.JComboBox;
20 import javax.swing.JComponent;
21 import javax.swing.JFileChooser;
22 import javax.swing.JFrame;
23 import javax.swing.JLabel;
24 import javax.swing.JPanel;
25 import javax.swing.JTextField;
26 import javax.swing.SpringLayout;
27 import javax.swing.SwingUtilities;
28 import javax.swing.event.DocumentEvent;
29 import javax.swing.event.DocumentListener;
30 import javax.swing.layout.SpringUtilities;
31 import javax.swing.text.BadLocationException;
32 import javax.swing.text.Document;
33
34 import org.apache.commons.lang3.StringUtils;
35 import org.apache.log4j.Logger;
36
37 import com.beust.jcommander.ParameterDescription;
38
39 import edu.unc.genomics.io.IntervalFile;
40 import edu.unc.genomics.io.WigFile;
41
42 /**
43 * View for configuring the parameters of a Job
44 * Implements databinding between a Job object and the various Swing components
45 * for configuring each parameter
46 *
47 * @author timpalpant
48 *
49 */
50 public class JobConfigPanel extends JPanel {
51
52 private static final long serialVersionUID = 3336295203155728629L;
53 private static final Logger log = Logger.getLogger(JobConfigPanel.class);
54
55 private static final ImageIcon fileIcon = new ImageIcon(ResourceManager.getImagesDirectory().resolve("folder_page.png").toString());
56
57 /**
58 * Maps parameters in the Job to GUI components (forward data-binding)
59 */
60 private Map<ParameterDescription, JComponent> guiMap = new HashMap<>();
61
62 /**
63 * Maps GUI components to parameters in the Job (reverse data-binding)
64 */
65 private Map<Component, ParameterDescription> jobMap = new HashMap<>();
66
67 /**
68 * The model for the Job that this panel allows you to configure
69 */
70 private Job job;
71
72 /**
73 * Initialize a new ConfigurationPanel with no Job
74 */
75 public JobConfigPanel() {
76 this(null);
77 }
78
79 /**
80 * Initialize a new ConfigurationPanel for the given Job
81 * @param job
82 */
83 public JobConfigPanel(final Job job) {
84 setJob(job);
85 setLayout(new SpringLayout());
86 }
87
88 /**
89 * Return the Job that this ConfigurationPanel is editing
90 * @return
91 */
92 public Job getJob() {
93 return job;
94 }
95
96 /**
97 * Set the job for this Configuration panel and re-render
98 * @param job
99 */
100 public void setJob(final Job job) {
101 this.job = job;
102 renderJob();
103 }
104
105 /**
106 * Highlights fields on the Panel that are not set correctly
107 */
108 public void highlightInvalidArguments() {
109 for (ParameterDescription param : job) {
110 JComponent guiComponent = guiMap.get(param);
111 if (param.getParameter().required() && !job.isSet(param)) {
112 guiComponent.setBorder(BorderFactory.createLineBorder(Color.RED));
113 } else {
114 guiComponent.setBorder(BorderFactory.createEmptyBorder());
115 }
116 }
117 }
118
119 /**
120 * Render the parameters from the Job into GUI components
121 * and set up one-way data binding to map changes to the GUI fields
122 * back into the Job object's parameters
123 */
124 private void renderJob() {
125 removeAll();
126 guiMap.clear();
127 jobMap.clear();
128 if (job == null) {
129 validate();
130 repaint();
131 return;
132 }
133
134 // Iterate through the parameters in the Job
135 // and render them appropriately based on their type
136 for (ParameterDescription paramDescription : job) {
137 // Add the parameter name to the configuration panel
138 String name = paramDescription.getLongestName();
139 while (name.startsWith("-")) {
140 name = name.substring(1);
141 }
142 name = StringUtils.capitalize(name);
143 JLabel label = new JLabel(name);
144 label.setBorder(BorderFactory.createEmptyBorder(0, 0, 0, 5));
145 add(label);
146
147 // Add a panel for configuring the parameter
148 JPanel fieldPanel = new JPanel();
149 fieldPanel.setLayout(new BoxLayout(fieldPanel, BoxLayout.LINE_AXIS));
150 add(fieldPanel);
151 Field field = paramDescription.getField();
152 Class<?> type = field.getType();
153 if (type.equals(Assembly.class)) {
154 List<Assembly> availableAssemblies = AssemblyManager.getAvailableAssemblies();
155 Assembly[] assemblies = new Assembly[availableAssemblies.size()];
156 assemblies = availableAssemblies.toArray(assemblies);
157 final JComboBox<Assembly> cbAssemblyChooser = new JComboBox<Assembly>(assemblies);
158 cbAssemblyChooser.setPreferredSize(new Dimension(0, 25));
159 cbAssemblyChooser.setMaximumSize(new Dimension(Integer.MAX_VALUE, cbAssemblyChooser.getPreferredSize().height));
160 cbAssemblyChooser.setSelectedItem(AssemblyManager.getLastUsed());
161 cbAssemblyChooser.addActionListener(new ActionListener() {
162 public void actionPerformed(ActionEvent e) {
163 log.debug("Auto-databinding changed assembly into Job argument");
164 Assembly selectedAssembly = (Assembly) cbAssemblyChooser.getSelectedItem();
165 AssemblyManager.setLastUsed(selectedAssembly);
166 ParameterDescription param = jobMap.get(cbAssemblyChooser);
167 job.setArgument(param, selectedAssembly.toString());
168 }
169 });
170 fieldPanel.add(cbAssemblyChooser);
171 guiMap.put(paramDescription, cbAssemblyChooser);
172 jobMap.put(cbAssemblyChooser, paramDescription);
173 } else {
174 final JTextField textField = new JTextField();
175 // Set to default parameter, if it exists
176 if (job.isSet(paramDescription)) {
177 textField.setText(job.getArgument(paramDescription));
178 }
179 textField.setPreferredSize(new Dimension(0, 20));
180 textField.setMaximumSize(new Dimension(Integer.MAX_VALUE, textField.getPreferredSize().height));
181 textField.getDocument().addDocumentListener(new DocumentListener() {
182 public void changedUpdate(DocumentEvent e) {
183 pushTextToModel(e);
184 }
185
186 public void removeUpdate(DocumentEvent e) {
187 pushTextToModel(e);
188 }
189
190 public void insertUpdate(DocumentEvent e) {
191 pushTextToModel(e);
192 }
193
194 private void pushTextToModel(DocumentEvent e) {
195 log.debug("Auto-databinding changed text into Job argument");
196 Document doc = (Document) e.getDocument();
197 ParameterDescription param = jobMap.get(textField);
198 try {
199 String text = doc.getText(0, doc.getLength());
200 job.setArgument(param, text);
201 } catch (BadLocationException e1) {
202 log.error("Error pushing changed text into Job model");
203 e1.printStackTrace();
204 }
205 }
206 });
207 fieldPanel.add(textField);
208 guiMap.put(paramDescription, textField);
209 jobMap.put(textField, paramDescription);
210
211 // For input/output files, add a file chooser button
212 if (type.equals(Path.class) || type.equals(WigFile.class) || type.equals(IntervalFile.class)) {
213 // TODO Replace with file icon
214 JButton btnChooseFile = new JButton(fileIcon);
215 btnChooseFile.addActionListener(new ActionListener() {
216 public void actionPerformed(ActionEvent e) {
217 // AWT FileDialog uses native components, but seems to hang
218 //Component c = (Component) e.getSource();
219 //JFrame frame = (JFrame) SwingUtilities.getRoot(c);
220 //FileDialog fd = new FileDialog(frame, "Choose File");
221 //fd.setVisible(true);
222 //if (fd.getFile() != null) {
223 // textField.setText(fd.getDirectory()+fd.getFile());
224 //}
225
226 // Swing JFileChooser
227 JFileChooser fc = new JFileChooser();
228 int retValue = fc.showDialog(getParent(), "OK");
229 if (retValue == JFileChooser.APPROVE_OPTION) {
230 textField.setText(fc.getSelectedFile().toString());
231 }
232 }
233 });
234 fieldPanel.add(btnChooseFile);
235 }
236 }
237 }
238
239 // Lay out the panel
240 SpringUtilities.makeCompactGrid(this, job.numParameters(), 2, 5, 5, 5, 5);
241
242 validate();
243 repaint();
244 }
245
246 }