Mercurial > repos > timpalpant > java_genomics_toolkit

comparison java-genomics-toolkit/src/edu/unc/genomics/IntervalFileConverter.java @ 0:1daf3026d231

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Upload alpha version
author timpalpant
date Mon, 13 Feb 2012 21:55:55 -0500
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-1:000000000000 0:1daf3026d231
1 package edu.unc.genomics;
2
3 import java.io.IOException;
4 import java.nio.file.Path;
5
6 import com.beust.jcommander.IStringConverter;
7 import com.beust.jcommander.ParameterException;
8
9 import edu.unc.genomics.io.IntervalFile;
10
11 /**
12 * @author timpalpant
13 *
14 */
15 public class IntervalFileConverter implements IStringConverter<IntervalFile<? extends Interval>> {
16
17 @Override
18 public IntervalFile<? extends Interval> convert(String value) throws ParameterException {
19 PathConverter converter = new PathConverter();
20 Path p = converter.convert(value);
21 try {
22 return IntervalFile.autodetect(p);
23 } catch (IOException e) {
24 throw new ParameterException("IOException while attempting to autodetect interval file type");
25 }
26 }
27
28 }