Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/IntervalToBed.xml @ 15:3e477c7e0e73 draft
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
| author | timpalpant |
|---|---|
| date | Sat, 09 Jun 2012 16:03:59 -0400 |
| parents | |
| children | b2a69d34385a |
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| 14:f58706d4d421 | 15:3e477c7e0e73 |
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| 1 <tool id="IntervalToBed" name="SAM/BAM/GFF/BedGraph/BigBed to Bed" version="1.0.0"> | |
| 2 <description>converter</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh converters.IntervalToBed -i $input -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="sam,bam,gff,bigbed,bedgraph" label="Input" /> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data name="output" format="bed" metadata_source="input" /> | |
| 9 </outputs> | |
| 10 <help> | |
| 11 | |
| 12 This tool will convert any file in SAM, BAM, GFF, BedGraph, or BigBed format to Bed format. | |
| 13 | |
| 14 </help> | |
| 15 </tool> |