Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/IntervalToBed.xml @ 15:3e477c7e0e73 draft
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author | timpalpant |
---|---|
date | Sat, 09 Jun 2012 16:03:59 -0400 |
parents | |
children | b2a69d34385a |
comparison
equal
deleted
inserted
replaced
14:f58706d4d421 | 15:3e477c7e0e73 |
---|---|
1 <tool id="IntervalToBed" name="SAM/BAM/GFF/BedGraph/BigBed to Bed" version="1.0.0"> | |
2 <description>converter</description> | |
3 <command interpreter="sh">galaxyToolRunner.sh converters.IntervalToBed -i $input -o $output</command> | |
4 <inputs> | |
5 <param name="input" type="data" format="sam,bam,gff,bigbed,bedgraph" label="Input" /> | |
6 </inputs> | |
7 <outputs> | |
8 <data name="output" format="bed" metadata_source="input" /> | |
9 </outputs> | |
10 <help> | |
11 | |
12 This tool will convert any file in SAM, BAM, GFF, BedGraph, or BigBed format to Bed format. | |
13 | |
14 </help> | |
15 </tool> |