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comparison galaxy-conf/IntervalToWig.xml @ 15:3e477c7e0e73 draft

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Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents eb53be9a09f4
children b2a69d34385a
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14:f58706d4d421 15:3e477c7e0e73
1 <tool id="BedToWig" name="Interval to Wig" version="1.0.0"> 1 <tool id="BedToWig" name="Interval to Wig" version="1.1.0">
2 <description>converter</description> 2 <description>converter</description>
3 <command interpreter="sh">galaxyToolRunner.sh converters.IntervalToWig -i $input $zero -a ${chromInfo} -o $output</command> 3 <command interpreter="sh">galaxyToolRunner.sh converters.IntervalToWig -i $input $zero -a ${chromInfo} -o $output</command>
4 <inputs> 4 <inputs>
5 <param name="input" type="data" format="bed,bedgraph,gff" label="Input Bed/BedGraph/GFF file" /> 5 <param name="input" type="data" format="bed,bedgraph,gff" label="Input Bed/BedGraph/GFF file" />
6 <param name="zero" type="boolean" checked="false" truevalue="-z" falsevalue="" label="Assume zero where there is no data (default is NaN)" /> 6 <param name="zero" type="boolean" checked="false" truevalue="-z" falsevalue="" label="Assume zero where there is no data (default is NaN)" />