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comparison galaxy-conf/LogTransform.xml @ 15:3e477c7e0e73 draft

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Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents eb53be9a09f4
children
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14:f58706d4d421 15:3e477c7e0e73
1 <tool id="Logger" name="Log transform" version="1.0.0"> 1 <tool id="WigLogTransform" name="Log transform" version="1.1.0">
2 <description>a (Big)Wig file</description> 2 <description>a (Big)Wig file</description>
3 <command interpreter="sh">galaxyToolRunner.sh wigmath.LogTransform -i $input -b $base -o $output</command> 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.LogTransform -i $input -b $base -o $output</command>
4 <inputs> 4 <inputs>
5 <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" /> 5 <param format="bigwig,wig" name="input" type="data" label="(Big)Wig file" />
6 <param name="base" type="integer" value="2" label="Logarithm base" /> 6 <param name="base" type="integer" value="2" label="Logarithm base" />