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comparison galaxy-conf/MapDyads.xml @ 15:3e477c7e0e73 draft

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Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents 81d5b81fb3c2
children
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14:f58706d4d421 15:3e477c7e0e73
1 <tool id="MapDyads" name="Map dyads" version="1.0.0"> 1 <tool id="MapDyads" name="Map dyads" version="1.1.0">
2 <description>from sequencing reads</description> 2 <description>from sequencing reads</description>
3 <command interpreter="sh"> 3 <command interpreter="sh">
4 galaxyToolRunner.sh nucleosomes.MapDyads -i $input -a ${chromInfo} -o $output 4 galaxyToolRunner.sh nucleosomes.MapDyads -i $input -a ${chromInfo} -o $output
5 #if $type.read == 'single' 5 #if $type.read == 'single'
6 -s $type.size 6 -s $type.size