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comparison galaxy-conf/RollingReadLength.xml @ 15:3e477c7e0e73 draft

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Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
author timpalpant
date Sat, 09 Jun 2012 16:03:59 -0400
parents 81d5b81fb3c2
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14:f58706d4d421 15:3e477c7e0e73
1 <tool id="RollingReadLength" name="Compute mean fragment length" version="1.0.0"> 1 <tool id="RollingReadLength" name="Compute mean fragment length" version="1.1.0">
2 <description>over each locus</description> 2 <description>over each locus</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command> 3 <command interpreter="sh">galaxyToolRunner.sh ngs.RollingReadLength -i $input -a ${chromInfo} -o $output</command>
4 <inputs> 4 <inputs>
5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" /> 5 <param format="sam,bam,bed,bedgraph" name="input" type="data" label="Mapped reads" />
6 </inputs> 6 </inputs>