Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/Shift.xml @ 15:3e477c7e0e73 draft
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes.
| author | timpalpant |
|---|---|
| date | Sat, 09 Jun 2012 16:03:59 -0400 |
| parents | 81d5b81fb3c2 |
| children |
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| 14:f58706d4d421 | 15:3e477c7e0e73 |
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| 1 <tool id="WigShift" name="Mean shift" version="1.0.0"> | 1 <tool id="WigShift" name="Mean shift" version="1.2.0"> |
| 2 <description>a (Big)Wig file</description> | 2 <description>a (Big)Wig file</description> |
| 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Shift -i $input -m $M -o $output</command> | 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Shift -i $input -m $M $chr -o $output</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param format="bigwig,wig" name="input" type="data" label="Shift the data in" /> | 5 <param format="bigwig,wig" name="input" type="data" label="Shift the data in" /> |
| 6 <param name="M" type="float" value="0" label="To have mean" /> | 6 <param name="M" type="float" value="0" label="To have mean" /> |
| 7 <param name="chr" type="boolean" checked="false" truevalue="-c" falsevalue="" label="Mean-shift chromosomes individually" /> | |
| 7 </inputs> | 8 </inputs> |
| 8 <outputs> | 9 <outputs> |
| 9 <data format="wig" name="output" metadata_source="input" /> | 10 <data format="wig" name="output" metadata_source="input" /> |
| 10 </outputs> | 11 </outputs> |
| 11 <help> | 12 <help> |