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comparison galaxy-conf/BaseAlignCounts.xml @ 4:4b32ed5d4a1b

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author timpalpant
date Tue, 14 Feb 2012 00:59:33 -0500
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3:4b610dc8f6ba 4:4b32ed5d4a1b
1 <tool id="BaseAlignCounts" name="Map coverage" version="1.0.0">
2 <description>of sequencing reads</description>
3 <command interpreter="sh">galaxyToolRunner.sh ngs.BaseAlignCounts -i $input -g ${chromInfo} -x $X -o $output</command>
4 <inputs>
5 <param name="input" type="data" format="bam,sam,bed,bedgraph" label="Sequencing reads" />
6 <param name="X" type="integer" value="0" label="In silico extension (leave 0 for read length)" />
7 </inputs>
8 <outputs>
9 <data name="output" format="wig" />
10 </outputs>
11
12 <help>
13 .. class:: warningmark
14
15 This tool requires sequencing reads in SAM/BAM/Bed/BedGraph format.
16 </help>
17 </tool>