Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/FindBoundaryNucleosomes.xml @ 4:4b32ed5d4a1b
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| author | timpalpant |
|---|---|
| date | Tue, 14 Feb 2012 00:59:33 -0500 |
| parents | |
| children | b1952a90d4bf |
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| 3:4b610dc8f6ba | 4:4b32ed5d4a1b |
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| 1 <tool id="FindNuke" name="Find boundary nucleosomes" version="1.0.0"> | |
| 2 <description>in windows</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.FindBoundaryNucleosomes -i $input -l $loci -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="nukes" label="Nucleosome calls" /> | |
| 6 <param name="loci" type="data" format="bed" label="List of intervals" /> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data name="output" format="bed" metadata_source="loci" /> | |
| 10 </outputs> | |
| 11 | |
| 12 <help> | |
| 13 .. class:: warningmark | |
| 14 | |
| 15 Use the Greedy Caller tool to create a file of called nucleosomes, then use this tool to identify the first nucleosome's dyad position from the 5' or 3' end. | |
| 16 </help> | |
| 17 </tool> |