Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/GreedyCaller.xml @ 4:4b32ed5d4a1b
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| author | timpalpant |
|---|---|
| date | Tue, 14 Feb 2012 00:59:33 -0500 |
| parents | |
| children | b1952a90d4bf |
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| 3:4b610dc8f6ba | 4:4b32ed5d4a1b |
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| 1 <tool id="CallNukes" name="Call Nucleosomes" version="1.0.0"> | |
| 2 <description>in an MNase experiment</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh nucleosomes.GreedyCaller -d $dyads -s $smoothed -n $N -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="dyads" type="data" format="bigwig,wig" label="Dyad counts" /> | |
| 6 <param name="smoothed" type="data" format="bigwig,wig" label="Smoothed dyad counts" /> | |
| 7 <param name="N" type="integer" value="147" optional="true" label="Assumed nucleosome size" /> | |
| 8 </inputs> | |
| 9 <outputs> | |
| 10 <data name="output" format="tabular" /> | |
| 11 </outputs> | |
| 12 | |
| 13 <help> | |
| 14 .. class:: warningmark | |
| 15 | |
| 16 This tool requires dyad counts and smoothed dyad counts. | |
| 17 | |
| 18 .. class:: warningmark | |
| 19 | |
| 20 This tool was contributed by Timothy Palpant. | |
| 21 </help> | |
| 22 </tool> |