Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/MovingAverageSmooth.xml @ 4:4b32ed5d4a1b
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| author | timpalpant |
|---|---|
| date | Tue, 14 Feb 2012 00:59:33 -0500 |
| parents | |
| children | 9266d807ca85 |
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| 3:4b610dc8f6ba | 4:4b32ed5d4a1b |
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| 1 <tool id="GaussianSmoother" name="Gaussian smooth" version="1.0.0"> | |
| 2 <description>a (Big)Wig file</description> | |
| 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.MovingAverageSmooth -i $input -w $W -o $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="bigwig,wig" label="Smooth the data in" /> | |
| 6 <param name="W" type="integer" value="20" optional="true" label="Width of the moving average in base pairs" /> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="wig" name="output" metadata_source="input" /> | |
| 10 </outputs> | |
| 11 <tests> | |
| 12 <!--<test> | |
| 13 <param name="input" value="test.wig"/> | |
| 14 <param name="dbkey" value="sacCer2"/> | |
| 15 <param name="S" value="20"/> | |
| 16 <param name="W" value="3"/> | |
| 17 <output name="output" file="smoother.output1"/> | |
| 18 </test> | |
| 19 <test> | |
| 20 <param name="input" value="test.bw"/> | |
| 21 <param name="dbkey" value="sacCer2"/> | |
| 22 <param name="S" value="20"/> | |
| 23 <param name="W" value="3"/> | |
| 24 <output name="output" file="smoother.output1"/> | |
| 25 </test> | |
| 26 <test> | |
| 27 <param name="input" value="test.wig"/> | |
| 28 <param name="dbkey" value="sacCer2"/> | |
| 29 <param name="S" value="10"/> | |
| 30 <param name="W" value="2"/> | |
| 31 <output name="output" file="smoother.output2"/> | |
| 32 </test> | |
| 33 <test> | |
| 34 <param name="input" value="test.bw"/> | |
| 35 <param name="dbkey" value="sacCer2"/> | |
| 36 <param name="S" value="10"/> | |
| 37 <param name="W" value="2"/> | |
| 38 <output name="output" file="smoother.output2"/> | |
| 39 </test> | |
| 40 <test> | |
| 41 <param name="input" value="test.wig"/> | |
| 42 <param name="dbkey" value="sacCer2"/> | |
| 43 <param name="S" value="50"/> | |
| 44 <param name="W" value="1"/> | |
| 45 <output name="output" file="smoother.output3"/> | |
| 46 </test> | |
| 47 <test> | |
| 48 <param name="input" value="test.bw"/> | |
| 49 <param name="dbkey" value="sacCer2"/> | |
| 50 <param name="S" value="5"/> | |
| 51 <param name="W" value="1"/> | |
| 52 <output name="output" file="smoother.output3"/> | |
| 53 </test>--> | |
| 54 </tests> | |
| 55 | |
| 56 <help> | |
| 57 </help> | |
| 58 </tool> |