Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/Scale.xml @ 22:727fbba02ef7 draft
Fix a bug in GeneTrackToWig where +/- strands were not merged correctly. Add option to vary the chunk size of tools that process chromosomes in chunks.
| author | timpalpant |
|---|---|
| date | Tue, 19 Jun 2012 22:09:23 -0400 |
| parents | 9d56b5b85740 |
| children |
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| 21:51b28ce6ef7e | 22:727fbba02ef7 |
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| 2 <description>a (Big)Wig file</description> | 2 <description>a (Big)Wig file</description> |
| 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Scale -i $input -m $M $chr -o $output</command> | 3 <command interpreter="sh">galaxyToolRunner.sh wigmath.Scale -i $input -m $M $chr -o $output</command> |
| 4 <inputs> | 4 <inputs> |
| 5 <param format="bigwig,wig" name="input" type="data" label="Scale the data in" /> | 5 <param format="bigwig,wig" name="input" type="data" label="Scale the data in" /> |
| 6 <param name="M" type="float" value="0" label="Multiply by (leave 0 to scale by 1/mean)" /> | 6 <param name="M" type="float" value="0" label="Multiply by (leave 0 to scale by 1/mean)" /> |
| 7 <param name="chr" type="boolean" checked="false" truevalue="-c" falsevalue="" label="Scale chromosomes to 1/mean individually (no effect if scale factor is specified)" /> | 7 <param name="chr" type="boolean" checked="false" truevalue="--bychr" falsevalue="" label="Scale chromosomes to 1/mean individually (no effect if scale factor is specified)" /> |
| 8 </inputs> | 8 </inputs> |
| 9 <outputs> | 9 <outputs> |
| 10 <data format="wig" name="output" metadata_source="input" /> | 10 <data format="wig" name="output" metadata_source="input" /> |
| 11 </outputs> | 11 </outputs> |
| 12 <tests> | 12 <tests> |