Mercurial > repos > timpalpant > java_genomics_toolkit
comparison galaxy-conf/Scale.xml @ 12:81d5b81fb3c2 draft
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools.
| author | timpalpant |
|---|---|
| date | Wed, 25 Apr 2012 16:53:48 -0400 |
| parents | 4b32ed5d4a1b |
| children | 3e477c7e0e73 |
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| 11:b1952a90d4bf | 12:81d5b81fb3c2 |
|---|---|
| 46 <output name="output" file="percenter.output3"/> | 46 <output name="output" file="percenter.output3"/> |
| 47 </test>--> | 47 </test>--> |
| 48 </tests> | 48 </tests> |
| 49 | 49 |
| 50 <help> | 50 <help> |
| 51 | |
| 52 This tool will multiply all values in a Wig file by a scalar. For example, this can be used to normalize to read depth by multiplying by 1/(# reads). By default, the tool will scale to 1/(mean value), which is equivalent to dividing by coverage and multiplying by the size of the genome. The resulting output file should have mean 1. | |
| 53 | |
| 54 .. class:: infomark | |
| 55 | |
| 56 **TIP:** If your dataset does not appear in the pulldown menu, it means that it is not in Wig or BigWig format. Use "edit attributes" to set the correct format if it was not detected correctly. | |
| 57 | |
| 51 </help> | 58 </help> |
| 52 </tool> | 59 </tool> |